Phages for control of foodborne pathogens: we’re not there yet

Wherever there are bacteria, very likely there are bacteriophages attacking them. So it makes sense to enlist nature’s predator to fight foodborne pathogens. Why are bacteriophages, then, still slow to the market?
Well, because other pre-harvest interventions like lactic acid can do the same job essentially — ensure the cleanliness of the animals and raw materials entering processing facilities — at a much less expensive price. The last 10 to 12 years have certainly seen an increase in companies researching and launching commercial applications of bacteriophages, or phages, but they are still held back by efficacy, cost and lack of market demand.

via Phages: A Work in Porgress | 2013-06-11 | National Provisioner.

STEC hits College Station

The Brazos County Health Department and the Texas Department of State Health Services are investigating five cases of a possibly lethal strain of E. coli found in Brazos County residents.

The health department confirms that two children, both of whom are related, are in the hospital. Sources tell us that they are in fair condition at Texas Children’s Hospital in Houston.

Three local adults have also been confirmed to have E. coli. All cases have been confirmed within the last week by the health department, the most recent coming Monday.

Three additional local cases are also under investigation, but have yet to be confirmed.

All five confirmed cases, according to the health department, have the O157:H7 strain. The health department says it can cause kidney failure and possibly death.

 

 

Several Local E. coli Cases Investigated; Children Hospitalized – KBTX

François Jacob, 1920-2013

in France, smoking in the lab was mandatory.
in France, smoking in the lab was mandatory.

François Jacob, left, and Jacques Monod in 1971 (NYT)

Dr. François Jacob, a French war hero whose combat wounds forced him to change his career paths from surgeon to scientist, a pursuit that led to a Nobel Prize in 1965 for his role in discovering how genes are regulated, died on April 19 in Paris. He was 92.

Dr. Jacob said he had been watching a dull movie with his wife, Lysiane, in 1958 when he began daydreaming and was struck with an idea of how genes might function. “I think I’ve just thought up something important,” he told her.

Seven years later, Dr. Jacob shared the Nobel Prize in Physiology or Medicine with Dr. Jacques Monod and Dr. André Lwoff, his colleagues at the Pasteur Institute in Paris, for their discovery that cells can switch on and switch off certain genetic information. Their work, which focused on bacteria, increased understanding of how genes could be selectively deployed by an organism. “They’re all there in the egg. But how does the egg know when to turn from one type of cell type to another?” Richard Burian, a professor emeritus of philosophy and science studies at Virginia Tech, said of the question asked by Dr. Jacob and his colleagues. “There must be some kind of signal.”

 

François Jacob, Geneticist Who Pointed to How Traits Are Inherited, Dies at 92 – NYTimes.com

The lac operon (Wikipedia)

 

 

 

Antibiotic-resistant bacteria in retail meats may be on the rise

More than half of samples of ground turkey, pork chops and ground beef collected from supermarkets for testing by the federal government contained a bacteria resistant to antibiotics, according to a new report highlighting the findings.

The data, collected in 2011 by the National Antimicrobial Resistance Monitoring System — a joint program of the Food and Drug Administration, the Agriculture Department and the Centers for Disease Control and Prevention — show a sizable increase in the amount of meat contaminated with antibiotic-resistant forms of bacteria, known as superbugs, like Salmonella, E. coli and Campylobacter.

The government published the findings in February, but they received scant attention until the Environmental Work Group issued its report, “Superbugs Invade American Supermarkets,” which was partly underwritten by Applegate, which sells organic and antibiotic-free “natural” meats.

Report on U.S. Meat Sounds Alarm on ‘Superbugs’ – New York Times.

Related:

The government report in question: NARMS Retail Meat Annual Report, 2011.

FDA Annual Report on Antimicrobials Sold or Distributed for Food-Producing Animals in 2011.

A phage that carries its own CRISPR element

Bacteriophages (or phages) are the most abundant biological entities on earth, and are estimated to outnumber their bacterial prey by tenfold. The constant threat of phage predation has led to the evolution of a broad range of bacterial immunity mechanisms that in turn result in the evolution of diverse phage immune evasion strategies, leading to a dynamic co-evolutionary arms race. Although bacterial innate immune mechanisms against phage abound, the only documented bacterial adaptive immune system is the CRISPR/Cas (clustered regularly interspaced short palindromic repeats/CRISPR-associated proteins) system, which provides sequence-specific protection from invading nucleic acids, including phage. Here we show a remarkable turn of events, in which a phage-encoded CRISPR/Cas system is used to counteract a phage inhibitory chromosomal island of the bacterial host. A successful lytic infection by the phage is dependent on sequence identity between CRISPR spacers and the target chromosomal island. In the absence of such targeting, the phage-encoded CRISPR/Cas system can acquire new spacers to evolve rapidly and ensure effective targeting of the chromosomal island to restore phage replication.

A bacteriophage encodes its own CRISPR/Cas adaptive response to evade host innate immunity – Nature

Phage therapy back in the news

An alternative treatment for antibiotic-resistant infections that are raising concern nationwide already exists. But there’s a big problem. The treatment is not approved for use in the United States.

And it could be a decade or more for the treatment, long used in Russia, former Soviet nations, Eastern Europe and more recently in Asian nations, before it gets regulatory approval for safety and effectiveness.

The treatment method involves bacteriophages — viruses that kill bacteria — that are the world’s most abundant organisms. Each phage injects DNA into a specific bacterium to replicate itself, killing the bacterium in the process.

Recently, the U.S. Centers for Disease Control and Prevention sounded a national alarm about “Superbugs” or CRE — carbapenem-resistant Enterobacteriaceae. The “nightmare bacteria” are becoming untreatable to a point of killing one of every two patients whose infections reach the bloodstream, the CDC states.

Bacteriophages offer a way to fight resistant bacteria, but their use still awaits approval in the U.S. – Pittsburgh Post-Gazette.

See related stories:

Intralytix develops and markets bacteriophage-based products
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Not all viruses are the bad guys – Pittsburgh Post-Gazette.

CDC warns of rise in ‘nightmare bacteria’ – The Washington Post

Federal officials warned Tuesday that “nightmare bacteria” — including the deadly superbug that struck a National Institutes of Health facility two years ago — are increasingly resistant to even the strongest antibiotics, posing a growing threat to hospitals and nursing homes nationwide.

Thomas Frieden, director of the Centers for Disease Control and Prevention, said at a news conference: “It’s not often that our scientists come to me and say we have a very serious problem and we need to sound an alarm. But that’s exactly what we are doing today.”

 He called on doctors, hospital leaders and health officials to work together to stop the spread of the infections. “Our strongest antibiotics don’t work, and patients are left with potentially untreatable infections,” he said.