Jason Gill’s OrcID profile and Google Scholar profile

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Journal Publications

Therapeutic Bacteriophages for Gram-Negative Bacterial Infections in Animals and Humans. Zagaliotis P, Michalik-Provasek J, Gill JJ, Walsh TJ.  Pathog Immun. 2022 Oct 17;7(2):1-45. doi: 10.20411/pai.v7i2.516. eCollection 2022.

Comparative genomics of Acinetobacter baumannii and therapeutic bacteriophages from a patient undergoing phage therapy. Liu M, Hernandez-Morales A, Clark J, Le T, Biswas B, Bishop-Lilly KA, Henry M, Quinones J, Voegtly LJ, Cer RZ, Hamilton T, Schooley RT, Salka S, Young R, Gill JJ.  Nat Commun. 2022 Jun 30;13(1):3776. doi: 10.1038/s41467-022-31455-5.

New Insights into the Structure and Assembly of Bacteriophage P1. Gonzales MF, Piya DK, Koehler B, Zhang K, Yu Z, Zeng L, Gill JJ. Viruses. 2022 Mar 25;14(4):678. doi: 10.3390/v14040678.

Sheep in wolves’ clothing: Temperate T7-like bacteriophages and the origins of the Autographiviridae. Boeckman J, Korn A, Yao G, Ravindran A, Gonzalez C, Gill J.  Virology. 2022 Mar;568:86-100. doi: 10.1016/j.virol.2022.01.013. Epub 2022 Jan 31.

Effect of chronic and acute enterotoxigenic E. coli challenge on growth performance, intestinal inflammation, microbiome, and metabolome of weaned piglets.  Boeckman JX, Sprayberry S, Korn AM, Suchodolski JS, Paulk C, Genovese K, Rech RR, Giaretta PR, Blick AK, Callaway T, Gill JJ.  Sci Rep. 2022 Mar 23;12(1):5024. doi: 10.1038/s41598-022-08446-z.

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO). Ramsey J, McIntosh B, Renfro D, Aleksander SA, LaBonte S, Ross C, Zweifel AE, Liles N, Farrar S, Gill JJ, Erill I, Ades S, Berardini TZ, Bennett JA, Brady S, Britton R, Carbon S, Caruso SM, Clements D, Dalia R, Defelice M, Doyle EL, Friedberg I, Gurney SMR, Hughes L, Johnson A, Kowalski JM, Li D, Lovering RC, Mans TL, McCarthy F, Moore SD, Murphy R, Paustian TD, Perdue S, Peterson CN, Prüß BM, Saha MS, Sheehy RR, Tansey JT, Temple L, Thorman AW, Trevino S, Vollmer AC, Walbot V, Willey J, Siegele DA, Hu JC.  PLoS Comput Biol. 2021 Oct 28;17(10):e1009463. doi: 10.1371/journal.pcbi.1009463. eCollection 2021 Oct.

Comparative Genomics of Three Novel Jumbo Bacteriophages Infecting Staphylococcus aureus.  Korn AM, Hillhouse AE, Sun L, Gill JJ.  J Virol. 2021 Sep 9;95(19):e0239120. doi: 10.1128/JVI.02391-20. Epub 2021 Sep 9.

Solvent Extraction of Klebsiella pneumoniae Bacteriophage Lysates with 1-Dodecanol Results in Endotoxin Reduction with Low Risk of Solvent Contamination. Michalik-Provasek J, Parker H, Lessor L, Gill JJ.  Phage (New Rochelle). 2021 Sep 1;2(3):112-119. doi: 10.1089/phage.2021.0005. Epub 2021 Sep 17.

Differential Bacteriophage Efficacy in Controlling Salmonella in Cattle Hide and Soil Models.  Xie Y, Thompson T, O’Leary C, Crosby S, Nguyen QX, Liu M, Gill JJ.  Front Microbiol. 2021 Jun 28;12:657524. doi: 10.3389/fmicb.2021.657524. eCollection 2021.

Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation.  Ramsey J, Rasche H, Maughmer C, Criscione A, Mijalis E, Liu M, Hu JC, Young R, Gill JJ. PLoS Comput Biol. 2020 Nov 2;16(11):e1008214. doi: 10.1371/journal.pcbi.1008214. eCollection 2020 Nov.

Evaluation of Commercial Prototype Bacteriophage Intervention Designed for Reducing O157 and Non-O157 Shiga-Toxigenic Escherichia coli (STEC) on Beef Cattle Hide.  Tolen TN, Xie Y, Hairgrove TB, Gill JJ, Taylor TM.  Foods. 2018 Jul 16;7(7):114. doi: 10.3390/foods7070114.

Development and Validation of a Microtiter Plate-Based Assay for Determination of Bacteriophage Host Range and Virulence.  Xie Y, Wahab L, Gill JJ.  Viruses. 2018 Apr 12;10(4). pii: E189. doi: 10.3390/v10040189.

Characterization of a Novel Tectivirus Phage Toil and Its Potential as an Agent for Biolipid Extraction.  Gill JJ, Wang B, Sestak E, Young R, Chu KH.  Sci Rep. 2018 Jan 18;8(1):1062. doi: 10.1038/s41598-018-19455-2.

Linearmycins are lytic membrane-targeting antibiotics.  Stubbendieck RM, Brock DJ, Pellois JP, Gill JJ, Straight PD.  J Antibiot (Tokyo). 2018 Mar;71(3):372-381. doi: 10.1038/s41429-017-0005-z. Epub 2018 Jan 18.

Genomic and Biochemical Characterization of Acinetobacter Podophage Petty Reveals a Novel Lysis Mechanism and Tail-Associated Depolymerase Activity.  Hernandez-Morales AC, Lessor LL, Wood TL, Migl D, Mijalis EM, Russell WK, Young RF, Gill JJ.  J Virol. 2018 Jan 3. pii: JVI.01064-17. doi: 10.1128/JVI.01064-17.

Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection.  Schooley RT, Biswas B, Gill JJ, Hernandez-Morales A, Lancaster J, Lessor L, Barr JJ, Reed SL, Rohwer F, Benler S, Segall AM, Taplitz R, Smith DM, Kerr K, Kumaraswamy M, Nizet V, Lin L, McCauley MD, Strathdee SA, Benson CA, Pope RK, Leroux BM, Picel AC, Mateczun AJ, Cilwa KE, Regeimbal JM, Estrella LA, Wolfe DM, Henry MS, Quinones J, Salka S, Bishop-Lilly KA, Young R, Hamilton T.  Antimicrob Agents Chemother. 2017 Sep 22;61(10).

Complete Genome Sequence of Citrobacter freundii Myophage Mijalis. Parvataneni S, Mijalis EM, Kuty Everett GF, Rasche ES, Liu M, Gill JJ.  Genome Announc. 2017 Aug 3;5(31). pii: e00228-17. doi: 10.1128/genomeA.00228-17.

The multicomponent antirestriction system of phage P1 is linked to capsid morphogenesis.  Piya D, Vara L, Russell WK, Young R, Gill JJ.  Mol Microbiol. 2017 Aug;105(3):399-412.

Prevalence and Characterization of Salmonella enterica and Salmonella Bacteriophages Recovered from Beef Cattle Feedlots in South Texas.  Xie Y, Savell JW, Arnold AN, Gehring KB, Gill JJ, Taylor TM.  J Food Prot. 2016 Aug;79(8):1332-40.

MICROBIOLOGY. Phage therapy redux–What is to be done?  Young R, Gill JJ.  Science. 2015 Dec 4;350(6265):1163-4.

Bacteriophages of wastewater foaming-associated filamentous Gordonia reduce host levels in raw activated sludge.  Liu M, Gill JJ, Young R, Summer EJ.  Sci Rep. 2015 Sep 9;5:13754.

Bacteriophage application restores ethanol fermentation characteristics disrupted by Lactobacillus fermentum.  Liu M, Bischoff KM, Gill JJ, Mire-Criscione MD, Berry JD, Young R, Summer EJ.  Biotechnol Biofuels. 2015 Sep 4;8:132.

The habits of highly effective phages: population dynamics as a framework for identifying therapeutic phages. Bull JJ, Gill JJ. Front Microbiol. 2014 Nov 18;5:618.

Cultivation of lipid-producing bacteria with lignocellulosic biomass: effects of inhibitory compounds of lignocellulosic hydrolysates. Wang B, Rezenom YH, Cho KC, Tran JL, Lee do G, Russell DH, Gill JJ, Young R, Chu KH. Bioresour Technol. 2014 Jun;161:162-70.

Revised Genome Sequence of Staphylococcus aureus Bacteriophage K. Gill JJ. Genome Announc. 2014 Jan 23;2(1).

The Caulobacter crescentus phage phiCbK: genomics of a canonical phage. Gill JJ, Berry JD, Russell WK, Lessor L, Escobar Garcia DA, Hernandez D, Kane A, Keene J, Maddox M, Martin R, Mohan S, Thorn AM, Russell DH, Young R. BMC Genomics. 2012 Oct 10;13(1):542.

Genomes and characterization of phages Bcep22 and BcepIL02, founders of a novel phage type in Burkholderia cenocepacia.  Gill JJ, Summer EJ, Russell WK, Cologna SM, Carlile TM, Fuller AC, Kitsopoulos K, Mebane LM, Parkinson BN, Sullivan D, Carmody LA, Gonzalez CF, LiPuma JJ, Young R.  J Bacteriol. 2011 Oct;193(19):5300-13.

Genomic and functional analyses of Rhodococcus equi phages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7.  Summer EJ, Liu M, Gill JJ, Grant M, Chan-Cortes TN, Ferguson L, Janes C, Lange K, Bertoli M, Moore C, Orchard RC, Cohen ND, Young R.  Appl Environ Microbiol. 2011 Jan;77(2):669-83.

Efficacy of bacteriophage therapy in a model of Burkholderia cenocepacia pulmonary infection.  Carmody LA, Gill JJ, Summer EJ, Sajjan US, Gonzalez CF, Young RF, LiPuma JJ.  J Infect Dis. 2010 Jan 15;201(2):264-71.

Genomic and biological analysis of phage Xfas53 and related prophages of Xylella fastidiosa. Summer EJ, Enderle CJ, Ahern SJ, Gill JJ, Torres CP, Appel DN, Black MC, Young R, Gonzalez CF. J Bacteriol. 2010 Jan;192(1):179-90.

Phage choice, isolation, and preparation for phage therapy.  Gill JJ, Hyman P.  Curr Pharm Biotechnol. 2010 Jan;11(1):2-14.

Role of phages in the pathogenesis of Burkholderia, or ‘Where are the toxin genes in Burkholderia phages?’.  Summer EJ, Gill JJ, Upton C, Gonzalez CF, Young R.  Curr Opin Microbiol. 2007 Aug;10(4):410-7.

Book Chapters

Gill JJ, Young R. 2011. Therapeutic Applications of Phage Biology: History, Practice and Recommendations. In Emerging Trends in Antibacterial Discovery: Answering the Call to Arms, AA Miller and PF Miller, eds. Caister Academic Press, Norfolk, UK.

Gill JJ. 2010. Practical and Theoretical Considerations for the Use of Bacteriophages in Food Systems. In Bacteriophages in the Control of Food- and Waterborne Pathogens, PM Sabour and MW Griffiths, eds. ASM Press, Washington, DC, pp. 217-235.

Gill, JJ. 2008. Modeling Bacteriophage Therapy. In Bacteriophage Ecology: Population Growth, Evolution, and Impact of Bacterial Viruses, ST Abedon, ed. Cambridge University Press, Cambridge, UK, pp. 439-464.