{"id":568,"date":"2020-02-21T10:04:01","date_gmt":"2020-02-21T16:04:01","guid":{"rendered":"https:\/\/agrilife.org\/casolalab\/?p=568"},"modified":"2020-10-19T15:58:57","modified_gmt":"2020-10-19T20:58:57","slug":"new-paper-on-simulating-cnvs-and-exome-sequences","status":"publish","type":"post","link":"https:\/\/agrilife.org\/casolalab\/2020\/02\/21\/new-paper-on-simulating-cnvs-and-exome-sequences\/","title":{"rendered":"New paper on simulating CNVs and exome sequences"},"content":{"rendered":"<p>Happy to see our paper &#8220;<a href=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fgene.2020.00082\/full?&amp;utm_source=Email_to_authors_&amp;utm_medium=Email&amp;utm_content=T1_11.5e1_author&amp;utm_campaign=Email_publication&amp;field=&amp;journalName=Frontiers_in_Genetics&amp;id=510268\">SECNVs: A Simulator of Copy Number Variants and Whole-Exome Sequences From Reference Genomes<\/a>&#8221; published in Frontiers in Genetics! A robust CNV simulator for exome data was sorely needed, and we think SECNVs is filling this gap nicely. We included a number of options in this tool that will help customize CNV and exome read simulations to test current and novel algorithms to detect CNVs.<\/p>\n<p>It was a pleasure working with co-authors Yue Xing, Alan Dabney, Xiao Li, Guosong Wang and Clare Gill on this project. Yue Xing, who was a PhD student in the Genetics program when we started this work, deserves a lot of credit for her contribution to this work.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Happy to see our paper &#8220;SECNVs: A Simulator of Copy Number Variants and Whole-Exome Sequences From Reference Genomes&#8221; published in Frontiers in Genetics! A robust CNV simulator for exome data&#8230; <span class=\"read-more\"><a href=\"https:\/\/agrilife.org\/casolalab\/2020\/02\/21\/new-paper-on-simulating-cnvs-and-exome-sequences\/\">Read More &rarr;<\/a><\/span><\/p>\n","protected":false},"author":1414,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"_genesis_hide_title":false,"_genesis_hide_breadcrumbs":false,"_genesis_hide_singular_image":false,"_genesis_hide_footer_widgets":false,"_genesis_custom_body_class":"","_genesis_custom_post_class":"","_genesis_layout":"","footnotes":""},"categories":[1],"tags":[],"class_list":["post-568","post","type-post","status-publish","format-standard","category-uncategorized","entry"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v28.0 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>New paper on simulating CNVs and exome sequences - Casola Lab<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/agrilife.org\/casolalab\/2020\/02\/21\/new-paper-on-simulating-cnvs-and-exome-sequences\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"New paper on simulating CNVs and exome sequences - Casola Lab\" \/>\n<meta property=\"og:description\" content=\"Happy to see our paper &#8220;SECNVs: A Simulator of Copy Number Variants and Whole-Exome Sequences From Reference Genomes&#8221; published in Frontiers in Genetics! A robust CNV simulator for exome data... 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